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MAKE_BOOK_FIGURES=True
import numpy as np
import scipy.stats as st
import matplotlib as mpl
import matplotlib.pyplot as plt
%matplotlib inline
import matplotlib_inline
matplotlib_inline.backend_inline.set_matplotlib_formats('svg')
import seaborn as sns
sns.set_context("paper")
sns.set_style("ticks")
def set_book_style():
plt.style.use('seaborn-v0_8-white')
sns.set_style("ticks")
sns.set_palette("deep")
mpl.rcParams.update({
# Font settings
'font.family': 'serif', # For academic publishing
'font.size': 8, # As requested, 10pt font
'axes.labelsize': 8,
'axes.titlesize': 8,
'xtick.labelsize': 7, # Slightly smaller for better readability
'ytick.labelsize': 7,
'legend.fontsize': 7,
# Line and marker settings for consistency
'axes.linewidth': 0.5,
'grid.linewidth': 0.5,
'lines.linewidth': 1.0,
'lines.markersize': 4,
# Layout to prevent clipped labels
'figure.constrained_layout.use': True,
# Default DPI (will override when saving)
'figure.dpi': 600,
'savefig.dpi': 600,
# Despine - remove top and right spines
'axes.spines.top': False,
'axes.spines.right': False,
# Remove legend frame
'legend.frameon': False,
# Additional trim settings
'figure.autolayout': True, # Alternative to constrained_layout
'savefig.bbox': 'tight', # Trim when saving
'savefig.pad_inches': 0.1 # Small padding to ensure nothing gets cut off
})
def set_notebook_style():
plt.style.use('seaborn-v0_8-white')
sns.set_style("ticks")
sns.set_palette("deep")
mpl.rcParams.update({
# Font settings - using default sizes
'font.family': 'serif',
'axes.labelsize': 10,
'axes.titlesize': 10,
'xtick.labelsize': 9,
'ytick.labelsize': 9,
'legend.fontsize': 9,
# Line and marker settings
'axes.linewidth': 0.5,
'grid.linewidth': 0.5,
'lines.linewidth': 1.0,
'lines.markersize': 4,
# Layout settings
'figure.constrained_layout.use': True,
# Remove only top and right spines
'axes.spines.top': False,
'axes.spines.right': False,
# Remove legend frame
'legend.frameon': False,
# Additional settings
'figure.autolayout': True,
'savefig.bbox': 'tight',
'savefig.pad_inches': 0.1
})
def save_for_book(fig, filename, is_vector=True, **kwargs):
"""
Save a figure with book-optimized settings.
Parameters:
-----------
fig : matplotlib figure
The figure to save
filename : str
Filename without extension
is_vector : bool
If True, saves as vector at 1000 dpi. If False, saves as raster at 600 dpi.
**kwargs : dict
Additional kwargs to pass to savefig
"""
# Set appropriate DPI and format based on figure type
if is_vector:
dpi = 1000
ext = '.pdf'
else:
dpi = 600
ext = '.tif'
# Save the figure with book settings
fig.savefig(f"{filename}{ext}", dpi=dpi, **kwargs)
def make_full_width_fig():
return plt.subplots(figsize=(4.7, 2.9), constrained_layout=True)
def make_half_width_fig():
return plt.subplots(figsize=(2.35, 1.45), constrained_layout=True)
if MAKE_BOOK_FIGURES:
set_book_style()
else:
set_notebook_style()
make_full_width_fig = make_full_width_fig if MAKE_BOOK_FIGURES else lambda: plt.subplots()
make_half_width_fig = make_half_width_fig if MAKE_BOOK_FIGURES else lambda: plt.subplots()
The Principle of Maximum Entropy for Continuous Random Variables#
Maximum Entropy Code#
Writing generic code for finding maximum entropy distributions can be a lot of work. The compact implementation below is sufficient for our one-dimensional moment examples. It follows the moment-based formulation illustrated by the PyMaxEnt paper and its reference source, while keeping the implementation local and reproducible. It uses fixed Gauss–Legendre quadrature and SciPy’s nonlinear least-squares solver, so the notebook does not download code at runtime.
from scipy.optimize import least_squares
def reconstruct(moments, bnds=(-1.0, 1.0), quadrature_order=256):
"""Reconstruct a 1D maximum-entropy density from raw moments."""
moments = np.asarray(moments, dtype=float)
lower, upper = map(float, bnds)
powers = np.arange(moments.size)
nodes, weights = np.polynomial.legendre.leggauss(quadrature_order)
x_quad = 0.5 * (upper - lower) * nodes + 0.5 * (upper + lower)
w_quad = 0.5 * (upper - lower) * weights
basis = x_quad[:, None] ** powers[None, :]
def moment_residual(lambdas):
density = np.exp(np.clip(basis @ lambdas, -700.0, 700.0))
fitted = basis.T @ (w_quad * density)
return fitted - moments
initial = np.zeros(moments.size)
initial[0] = np.log(moments[0] / (upper - lower))
solution = least_squares(moment_residual, initial, max_nfev=5000)
if not solution.success or np.linalg.norm(solution.fun, ord=np.inf) > 1e-7:
raise RuntimeError("The requested moments could not be reconstructed.")
lambdas = solution.x
def pdf(x):
x = np.asarray(x, dtype=float)
polynomial = sum(
coefficient * x ** power
for power, coefficient in enumerate(lambdas)
)
density = np.exp(np.clip(polynomial, -700.0, 700.0))
return np.where((x >= lower) & (x <= upper), density, 0.0)
return pdf, lambdas
The reconstruct function is now defined locally and is ready to use:
# No external module download is required; reconstruct is defined above.
Examples of maximum entropy distributions#
We work in a 1D random variable setting.
The local reconstruct function requires that you specify the interval support of the distribution, i.e., an interval \([a,b]\) outside of which the probability density function should be zero, and the \(M\) moments of the distribution, i.e.,
for \(m=0,\dots,M\). Then, the maximum entropy distribution that satisfies these constraints is given by:
where the \(\lambda_0,\dots,\lambda_M\) are fitted so that the constraints are satisfied. Note that there is no need for the normalization constant here because it has been absorbed in \(\lambda_0\). Let’s do some examples to gain some intuition.
No constraints in [-1,1]#
The support is \([-1,1]\), and there are no moment constraints. You only have to specify the normalization constraint and the bounds:
mu = [1.0]
pdf, lambdas = reconstruct(mu, bnds=[-1.0, 1.0])
# plot the reconstructed solution
x = np.linspace(-1.0, 1.0, 100)
fig, ax = plt.subplots()
ax.plot(x, pdf(x))
ax.set_xlabel('$x$')
ax.set_ylabel('$p(x)$')
sns.despine(trim=True);
Mean constraint [-1,1]#
Same as before, but we are now going to impose a mean constraint:
mu = [1.0, # The required normalization constraint
0.0] # The mean constraint
pdf, lambdas = reconstruct(mu, bnds=[-1.0, 1.0])
# plot the reconstructed solution
x = np.linspace(-1.0, 1.0, 100)
fig, ax = plt.subplots()
ax.plot(x, pdf(x))
ax.set_xlabel('$x$')
ax.set_ylabel('$p(x)$');
Questions#
Modify the mean to \(\mu=0.1\) and observe the resulting maximum entropy pdf.
Modify the mean to \(\mu=-0.1\) and observe the resulting maximum entropy pdf.
Try \(\mu=0.9\). What happens to the maximum entropy pdf?
Try \(\mu=1.1\). Why does the code break down?
Variance constraint#
In addition to the mean constraint, we now include a variance constraint:
The local reconstruct function works with raw moment constraints.
Therefore, we must connect the variance to the second and first moments.
Here is how to do this:
mu = 0.0
sigma2 = 0.1
mus = [
1.0, # The required normalization constraint
mu, # The mean constraint
sigma2 + mu ** 2
] # The second moment constraint
pdf, lambdas = reconstruct(mus, bnds=[-1.0, 1.0])
# plot the reconstructed solution
x = np.linspace(-1.0, 1.0, 100)
fig, ax = plt.subplots()
ax.plot(x, pdf(x))
ax.set_xlabel('$x$')
ax.set_ylabel('$p(x)$')
sns.despine(trim=True);
Questions#
Modify the variance to \(\sigma^2=0.3\) and observe the resulting maximum entropy pdf.
Modify the variance to \(\sigma^2=0.4\) and observe the resulting maximum entropy pdf. Why did you get this abrupt change?
Try \(\sigma^2=1\). Why does the code break down?